Save the data of genes, transcripts and swissprot entries

It is possible to save the data of one gene, transcript or swissprot entry. On the details panel of gene, transcript or swissprot entry there is a button "Save Data" at the left buttom of the page. Click on this button and there will open a dialog to save ore open this file.

You can also download a set of data. On the search result pannel exists the button "Save Data". A click on this button will open a new panel with the same list of genes, transcripts or swissprot entries off your search result. Here you can select the data you want to save and press the button "Save Data". The selected data will be saved in one file, which has the same file format like single download. The different data sets are seperated by "> " and the identifier (ensemble gene id, ensembl transcript id or swissprot entry name).

The data are saved in a text file. Every line begins with a two letter code telling whats the data below up to. The text file is completely tab seperated.

Format of the gene data:

ID	ProSAS gene id
EN	ensembl gene name
AN	alternative gene names, seperated by blank|blank
DE	description of protein translated from the gene
OR	organism
CN	chromosom
ST	strand
LO	genestart and genestop, seperated by "-"
EX	number of exons
E1	data of the first exon: the ensemble exon name, coding start"-"coding stop, genomic start"-"genomic stop, coding phase, coding sequence
E2	data of the second exon: " "
...
TR	number of transcripts
T1	data of the first transcript: the transcript name, transcript type, the order of exons in this transcript (with the numbering from above)
T2	data of the second transcript: " "
...
AF	number of affymetrix features
A1	data of the first affymetrix feature: the id of the probeset, quality, probe count, the exon (with the numbering from above)
...

Format of the transcript data:

ID	ProSAS transcript id
SP	swissprot ids
UP	uniprot ids
GE	gene name
CN	chromosom
OR	organism
TY	type
SE	sequence
EX	number of exons
E1	data of the first exon: the ensemble exon name, coding start"-"coding stop, genomic start"-"genomic stop, coding phase, coding sequence
E2	data of the second exon: " "
...
AL	alignment pdb id, evalue, identity, coverage, start"-"stop
TE	template of the alignment
TR	target of the alignment
AL	there could be more alignments. they all have the same data format
TE	template of the alignment 2
TR	target of the alignment 2

Format of the swissprot entry data:

SP	swissprot id
PA	primary accession number
GE	gene name
OR	organism
EN	ensembl gene id
SE	sequence
ID	all additional ids
IS	isoform id, sequence
EV	the event to the isoform above: type of the event (Replace, Remove), from"-"to, the replaced sequence, the inserted sequence
EV	there could be more events in one isoform. they all have the same data format
IS	there could be more isoforms. they all have the same data format and new events
AL	alignment pdb id, evalue, identity, coverage, start"-"stop
TE	template of the alignment
TR	target of the alignment
AL	there could be more alignments, they have the same data format
TE	template of the alignment 2
TR	target of the alignment 2