Katrin Fundel

Katrin Fundel, Jochen Haag, Pia M. Gebhard, Ralf Zimmer, Thomas Aigner. Normalization strategies for mRNA expression data in cartilage research. Osteoarthritis Cartilage, vol 16, pp. 947-955, 2008.

Morgan AA, Lu Z, Wang X, Cohen AM, Fluck J, Ruch P, Divoli A, Katrin Fundel, Leaman R, Hakenberg J, Sun C, Liu HH, Torres R, Krauthammer M, Lau WW, Liu H, Hsu CN, Schuemie M, Cohen KB, Hirschman L. Overview of BioCreative II gene normalization.. Genome Biology, vol 9, no. Supplement 2, pp. S3, Epub 2008 Sep 1 2008.

Katrin Fundel, R. Küffner, T. Aigner, Ralf Zimmer. Normalization and gene p-value estimation: issues in microarray data processing. Bioinform Biol Insights, vol 2, pp. 291-305, 2008.

Katrin Fundel, R. Küffner, Ralf Zimmer. RelEx - Relation extraction using dependency parse trees. Bioinformatics, vol 23, no. 3, pp. 365-371, 2007.

Katrin Fundel, Ralf Zimmer. Human Gene Normalization by an Integrated Approach including Abbreviation Resolution and Disambiguation. Second BioCreative Challenge Evaluation Workshop, 2007.

Z. Fan, S. Soder, S. Oehler, Katrin Fundel, Thomas Aigner. Activation of interleukin-1 signaling cascades in normal and osteoarthritic articular cartilage. Am J Pathol, vol 171, no. 3, pp. 938-946, 2007.

Alexander Zien, Pia M. Gebhard, Katrin Fundel, Thomas Aigner. Phenotyping of chondrocytes in vivo and in vitro using cDNA array technology. Clin Orthop Relat Res, vol 460, pp. 226-33, 2007.

Katrin Fundel. Text Mining and Gene Expression Analysis - Towards Combined Interpretation of High Throughput Data. PhD Thesis, LMU München, September 2007.

Chad A. Davis, Fabian Gerick, Volker Hintermair, Caroline C. Friedel, Katrin Fundel, R. Küffner, Ralf Zimmer. Reliable gene signatures for microarray classification: assessment of stability and performance. Bioinformatics, vol 22, no. 19, pp. 2356-2363, 2006.

R. Küffner, T. Duchrow, Katrin Fundel, Ralf Zimmer. Characterization of Protein Interactions. Daniel Huson, Oliver Kohlbacher, Andrei Lupas, Kay Nieselt, Andreas Zell (eds.): German Conference on Bioinformatics (GCB), Tübingen, Germany, September 19-22, 2006, Lecture Notes in Informatics, vol P-83, pp. 64-73, Gesellschaft für Informatik, 2006.

Katrin Fundel, Ralf Zimmer. Gene and protein nomenclature in public databases. BMC Bioinformatics, vol 7, pp. 372, 2006.

Thomas Aigner, Katrin Fundel, Joachim Saas, Pia M. Gebhard, Jochen Haag, Tilo Weiss, Alexander Zien, Franz Obermayer, Ralf Zimmer, Eckart Bartnik. Large-Scale Gene Expression Profiling of Osteoarthritic Cartilage Degeneration. Arthritis&Rheumatism, vol 54, no. 11, pp. 3533-3544, 2006.

Katrin Fundel, R. Küffner, Thomas Aigner, Ralf Zimmer. Data Processing Effects on the Interpretation of Microarray Gene Expression Experiments. A. Torda, S. Kurtz, Matthias Rarey (eds.): German Conference on Bioinformatics (GCB) 2005, GI Lecture Notes in Informatics, vol P-71, pp. 77-91, GI, 2005.

R. Küffner, Katrin Fundel, Ralf Zimmer. Expert knowledge without the expert: integrated analysis of gene expression and literature to derive active functional contexts. Bioinformatics, vol 21, no. Suppl 2, pp. 259-267, 2005.

Katrin Fundel, Daniel Güttler, Ralf Zimmer, Joannis Apostolakis. A simple approach for protein name identification: prospects and limits. BMC Bioinformatics, vol 6, no. (Suppl.1), pp. S15, May 2005.

Katrin Fundel, Daniel Hanisch, Heinz-Theodor Mevissen, Ralf Zimmer, Juliane Fluck. ProMiner: rule-based protein and gene entity recognition. BMC Bioinformatics, vol 6, no. (Suppl.1), pp. S14, May 2005.

Katrin Fundel, Daniel Güttler, Ralf Zimmer, Joannis Apostolakis. Exact versus approximate string matching for protein name identification. BioCreative Challenge Evaluation Workshop, 2004.

Daniel Hanisch, Katrin Fundel, Heinz-Theodor Mevissen, Ralf Zimmer, Juliane Fluck. ProMiner: Organism-specific protein name detection using approximate string matching. BioCreative Challenge Evaluation Workshop, 2004.

Katrin Fundel. Entwicklung und Erprobung einer Teststrategie zur ökotoxikologischen Bewertung von Baustoffen. Master Thesis, Ecole superieure de biotechnologie, 1998.