Lukas Windhager

E-Mail:	Lukas.Windhager * at * bio.ifi.lmu.de
Phone:	+49-89-2180-4055
Fax:	+49-89-2180-99-4055
Address:	Teaching and Research Unit Bioinformatics Institut für Informatik Ludwig-Maximilians-Universität München
	Amalienstr. 17, 80333 Munich, Germany
Room:	402, 4. Floor

Research

Systems Biology
Petri Net and Fuzzy Logic based simulations
RNAseq

Teaching

SS 2012	Tutor for the lecture Algorithmic Bioinformatics: Networks, Graphs, and Systems
WS 2011/12	Tutor for the lecture Algorithmic Bioinformatics II Tutor for the practical course Advanced bioinformatics programming course Tutor for the practical course Bioinformatics programming cours
SS 2011	Tutor for the lecture Algorithmic Bioinformatics I
WS 2010/11	Tutor for the lecture Algorithmic Systems Biology Tutor for the practical course Advanced bioinformatics programming course Tutor for the practical course Bioinformatics programming cours
SS 2010	Tutor for the lecture Algorithmic Bioinformatics: Systems and Networks
WS 2009/10	Tutor for the lecture Algorithmic Bioinformatics II Tutor for the seminar Current Issues in Bioinformatics Tutor for the bioinformatics programming cours
SS 2009	Tutor for the lecture Algorithmic Bioinformatics I Tutor for the seminar Current Issues in Bioinformatics
WS 2008/09	Tutor for the lecture Algorithmic Systems Biology Tutor for the seminar Current Issues in Bioinformatics Tutor for the bioinformatics programming cours
SS 2008	Tutor for the lecture Algorithmic Bioinformatics: Systems and Networks Tutor for the seminar Current Issues in Bioinformatics
WS 2007/08	Tutor for the lecture Algorithmic Bioinformatics II Tutor for the bioinformatics programming cours

Publications

2014

Papers

Lukas Windhager, Jonas Zierer, Robert Küffner. Refining ensembles of predicted gene regulatory networks based on characteristic interaction sets. PLoS One, vol 9, no. 2, pp. e84596, 2014.

BibTex

2013

Papers

Kaspar Burger, Bastian Mühl, Markus Kellner, Michaela Rohrmoser, Anita Gruber-Eber, Lukas Windhager, Caroline C. Friedel, Lars Dölken, Dirk Eick. 4-thiouridine inhibits rRNA synthesis and causes a nucleolar stress response. RNA biology, vol 10, 2013 Sep 4 2013.

BibTex

Theses

Lukas Windhager. Modeling of Dynamic Systems with Petri Nets and Fuzzy Logic. PhD Thesis, LMU München, 2013.

E-Diss

BibTex

2012

Papers

Tobias Stögbauer, Lukas Windhager, Ralf Zimmer, Joachim O. Rädler. Experiment and Mathematical Modeling of Gene Expression Dynamics in a Cell-Free System. Integrative Biology, vol 4 (5), pp. 494 - 501, 2012.

BibTex

Robert Küffner, Tobias Petri, Pegah Tavakkolkhah, Lukas Windhager, Ralf Zimmer. Inferring Gene Regulatory Networks by ANOVA. Bioinformatics, vol 28, no. 10, pp. 1376-1382, March 2012.

BibTex

Lisa Marcinowski, Michael Lidschreiber, Lukas Windhager, Martina Rieder, Jens B. Bosse, Bernd Rädle, Thomas Bonfert, Ildiko Györy, deMiranda Graaf, daOlivia Prazeres Costa, Philip Rosenstiel, Caroline C. Friedel, Ralf Zimmer, Zsolt Ruzsics, Lars Dölken. Real-time Transcriptional Profiling of Cellular and Viral Gene Expression during Lytic Cytomegalovirus Infection. PLoS Pathog, vol 8, no. 9, pp. e1002908, 2012.

BibTex

Lukas Windhager, Thomas Bonfert, Kaspar Burger, Zsolt Ruzsics, Stefan Krebs, Stefanie Kaufmann, Georg Malterer, Anne L'Hernault, Markus Schilhabel, Stefan Schreiber, Philip Rosenstiel, Ralf Zimmer, Dirk Eick, Caroline C. Friedel, Lars Dölken. Ultrashort and progressive 4sU-tagging reveals key characteristics of RNA processing at nucleotide resolution.. Genome research, vol 22, pp. 2031-42, 2012 Oct 2012.

BibTex

2010

Papers

Wolfgang Fischer, Lukas Windhager, Stefanie Rohrer, Matthias Zeiller, Arno Karnholz, Reinhard Hoffmann, Ralf Zimmer, Rainer Haas. Strain-specific genes of Helicobacter pylori: Genome evolution driven by a novel type IV secretion system and genomic island transfer. Nucleic Acids Research, vol 38, no. 18, pp. 6089-101, Epub May 2010 2010.

BibTex

Lukas Windhager, Florian Erhard, Ralf Zimmer. Fuzzy modeling. Ina Koch, Wolfgang Reisig, Falk Schreiber (eds.): Modeling in Systems Biology: The Petri Net Approach, Springer, 2010.

BibTex

R. Küffner, Tobias Petri, Lukas Windhager, Ralf Zimmer. Petri Nets with Fuzzy Logic (PNFL): Reverse Engineering and Parametrization. PLoS One, vol 5, pp. e12807, 09 2010.

BibTex

2009

Papers

Fabian Birzele, Gergely Csaba, Florian Erhard, Caroline C. Friedel, R. Küffner, Tobias Petri, Lukas Windhager, Ralf Zimmer. Algorithmische Systembiologie mit Petrinetzen – Von qualitativen zu quantitativen Systemmodellen. Informatik-Spektrum, vol 32, no. 4, pp. 310-319, 2009.

DOI
Journal version

BibTex

2008

Papers

Lukas Windhager, Ralf Zimmer. Intuitive Modeling of Dynamic Systems with Petri Nets and Fuzzy Logic. German Conference on Bioinformatics, September 9-12, 2008, Dresden, Germany, Lecture Notes in Informatics, vol P-136, pp. 106-115, Gesellschaft für Informatik, 2008.

BibTex

2007

Theses

Lukas Windhager. Vergleichende Genomanalyse eines neu sequenzierten H.pylori Stamms. Master Thesis, LFE Bioinformatik, LMU München, July 2007.

BibTex

2005

Theses

Lukas Windhager. Inference of Regulatory Networks Using Physical Models. Bachelor Thesis, LFE Bioinformatik, LMU München, September 2005.

BibTex

Curriculum Vitae

Working experience and internships
since 2007	PhD-Student, Bioinformatics Group, University of Munich (LMU Munich)
2005 - 2007	Student assistant, Bioinformatics Group, University of Munich (LMU Munich)
Education
since 2007	PhD-Student, Bioinformatics Group, University of Munich (LMU Munich)
2005-2007	Bioinformatics course (Master), University of Munich (LMU Munich) and Technical University of Munich (TU Munich), M.sc.
2002-2005	Bioinformatics course (Bachelor), University of Munich (LMU Munich) and Technical University of Munich (TU Munich), B.sc.
2001-2002	One-year voluntary service at the Austrian Armed Forces. Officers training. Branch military logistics.
1992-2001	Matura, Bundesrealgymnasium Salzburg, Austria

Search

Links and Functions

Language Selection

User Menu

Breadcrumb Navigation

Main Navigation

Content

Service Menu

Footer